Hierarchy For All Packages

Package Hierarchies:

org.gersteinlab.tyna.core.graph, org.gersteinlab.tyna.core.io, org.gersteinlab.tyna.core.operators, org.gersteinlab.tyna.core.util, org.gersteinlab.tyna.cytoscape, org.gersteinlab.tyna.webapp.config, org.gersteinlab.tyna.webapp.data, org.gersteinlab.tyna.webapp.security, org.gersteinlab.tyna.webapp.util, org.gersteinlab.tyna.webservice

Class Hierarchy

• class java.lang.Object
  • class org.gersteinlab.tyna.core.graph.AbstractGraph (implements org.gersteinlab.tyna.core.graph.AdvancedGraph)
    • class org.gersteinlab.tyna.core.graph.AbstractMultiGraph (implements org.gersteinlab.tyna.core.graph.MultiGraph)
      • class org.gersteinlab.tyna.core.graph.DirectedMultiGraph (implements org.gersteinlab.tyna.core.graph.AdvancedDirectedGraph)
      • class org.gersteinlab.tyna.core.graph.UndirectedMultiGraph (implements org.gersteinlab.tyna.core.graph.AdvancedUndirectedGraph)
    • class org.gersteinlab.tyna.core.graph.AbstractSimpleGraph (implements org.gersteinlab.tyna.core.graph.SimpleGraph)
      • class org.gersteinlab.tyna.core.graph.DirectedSimpleGraph (implements org.gersteinlab.tyna.core.graph.AdvancedDirectedGraph)
      • class org.gersteinlab.tyna.core.graph.UndirectedSimpleGraph (implements org.gersteinlab.tyna.core.graph.AdvancedUndirectedGraph)
  • class org.gersteinlab.tyna.core.graph.AbstractGraph.AbstractGraphEdgeIterator (implements org.gersteinlab.tyna.core.graph.EdgeIterator)
    • class org.gersteinlab.tyna.core.graph.AbstractMultiGraph.AbstractMultiGraphEdgeIterator
      • class org.gersteinlab.tyna.core.graph.DirectedMultiGraph.DirectedMultiGraphEdgeIterator
      • class org.gersteinlab.tyna.core.graph.UndirectedMultiGraph.UndirectedMultiGraphEdgeIterator
    • class org.gersteinlab.tyna.core.graph.AbstractSimpleGraph.AbstractSimpleGraphEdgeIterator
      • class org.gersteinlab.tyna.core.graph.DirectedSimpleGraph.DirectedSimpleGraphEdgeIterator
      • class org.gersteinlab.tyna.core.graph.UndirectedSimpleGraph.UndirectedSimpleGraphEdgeIterator
  • class org.gersteinlab.tyna.core.graph.AbstractGraph.AbstractGraphNodeIterator (implements org.gersteinlab.tyna.core.graph.NodeIterator)
  • class org.gersteinlab.tyna.core.graph.AbstractGraph.BetweennessNode
  • class org.gersteinlab.tyna.core.graph.AbstractGraph.DuplicateTree
  • class org.gersteinlab.tyna.core.graph.AbstractGraph.HeadTailTree
    • class org.gersteinlab.tyna.core.graph.AbstractGraph.HeadTree
    • class org.gersteinlab.tyna.core.graph.AbstractGraph.TailTree
  • class org.gersteinlab.tyna.webapp.data.Category (implements java.io.Serializable)
  • class org.gersteinlab.tyna.webapp.data.CategoryInfo
  • class org.gersteinlab.tyna.webapp.data.CategoryInfo.CategoryInfoNodeIterator (implements org.gersteinlab.tyna.core.graph.NodeIterator)
  • class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • class java.awt.Container
      • class java.awt.Window (implements javax.accessibility.Accessible)
        • class java.awt.Frame (implements java.awt.MenuContainer)
          • class javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • class org.gersteinlab.tyna.cytoscape.TYNADownloadWin (implements java.awt.event.ActionListener)
            • class org.gersteinlab.tyna.cytoscape.TYNAUploadWin (implements java.awt.event.ActionListener)
  • class org.gersteinlab.tyna.core.io.CSVIO (implements org.gersteinlab.tyna.core.io.GraphReader, org.gersteinlab.tyna.core.io.GraphWriter)
  • class cytoscape.plugin.CytoscapePlugin
    • class org.gersteinlab.tyna.cytoscape.TYNAPlugin (implements java.awt.event.ActionListener)
  • class java.util.Dictionary
    • class java.util.Hashtable (implements java.lang.Cloneable, java.util.Map, java.io.Serializable)
      • class java.util.Properties
        • class org.gersteinlab.tyna.webapp.config.Config
  • class org.gersteinlab.tyna.core.operators.Difference (implements org.gersteinlab.tyna.core.operators.BinaryOperator)
  • class org.gersteinlab.tyna.core.graph.Edge (implements java.io.Serializable)
  • class org.gersteinlab.tyna.webapp.data.FileDataStore
  • class javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
    • class javax.servlet.http.HttpServlet (implements java.io.Serializable)
      • class org.gersteinlab.tyna.webapp.util.FileDownload
      • class org.gersteinlab.tyna.webapp.util.HouseKeeper (implements java.lang.Runnable)
  • class org.gersteinlab.tyna.core.util.IntegerPool
  • class org.gersteinlab.tyna.cytoscape.InteractionsReader2 (implements cytoscape.data.readers.GraphReader)
  • class org.gersteinlab.tyna.cytoscape.InteractionsSerializer2
  • class org.gersteinlab.tyna.core.operators.Intersection (implements org.gersteinlab.tyna.core.operators.BinaryOperator)
  • class org.gersteinlab.tyna.core.operators.MotifMiner (implements org.gersteinlab.tyna.core.operators.UnaryOperator)
    • class org.gersteinlab.tyna.core.operators.ChainMotifMiner
    • class org.gersteinlab.tyna.core.operators.CompleteTwoLayerMotifMiner
    • class org.gersteinlab.tyna.core.operators.CycleMotifMiner
    • class org.gersteinlab.tyna.core.operators.DefectiveCliqueMotifMiner
    • class org.gersteinlab.tyna.core.operators.FeedforwardLoopMotifMiner
  • class org.gersteinlab.tyna.core.util.MutableDouble
  • class org.gersteinlab.tyna.core.util.MutableInteger
  • class org.gersteinlab.tyna.webapp.data.Network (implements java.io.Serializable)
  • class org.gersteinlab.tyna.webapp.data.NetworkAttr (implements java.io.Serializable)
  • class org.gersteinlab.tyna.webapp.data.NetworkFormat (implements java.io.Serializable)
  • class org.gersteinlab.tyna.webapp.data.NetworkType (implements java.io.Serializable)
  • class org.gersteinlab.tyna.core.graph.Node (implements java.lang.Comparable, java.io.Serializable)
  • class org.gersteinlab.tyna.core.operators.NodeIdFilter (implements org.gersteinlab.tyna.core.operators.UnaryOperator)
  • class org.gersteinlab.tyna.core.util.NodePair (implements java.lang.Comparable)
  • class org.gersteinlab.tyna.webapp.data.RDBDataStore
  • class org.gersteinlab.tyna.webapp.security.SecurityController
  • class org.gersteinlab.tyna.core.io.SIFIO (implements org.gersteinlab.tyna.core.io.GraphReader, org.gersteinlab.tyna.core.io.GraphWriter)
  • class org.gersteinlab.tyna.core.util.SimpleStats
  • class org.gersteinlab.tyna.core.operators.StatisticsFilter (implements org.gersteinlab.tyna.core.operators.UnaryOperator)
  • class org.gersteinlab.tyna.core.io.TDIO (implements org.gersteinlab.tyna.core.io.GraphReader, org.gersteinlab.tyna.core.io.GraphWriter)
  • class org.gersteinlab.tyna.webapp.util.TextUtil
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Exception
      • class org.gersteinlab.tyna.webapp.config.ConfigException
      • class org.gersteinlab.tyna.core.graph.GraphTypeException
      • class org.gersteinlab.tyna.core.io.InputFormatException
      • class org.gersteinlab.tyna.core.io.OutputFormatException
      • class org.gersteinlab.tyna.webapp.security.SecurityException
  • class org.gersteinlab.tyna.webservice.TYNASoapBindingImpl (implements org.gersteinlab.tyna.webservice.TYNA)
  • class org.gersteinlab.tyna.core.operators.Union (implements org.gersteinlab.tyna.core.operators.BinaryOperator)
  • class org.gersteinlab.tyna.webapp.data.User (implements java.io.Serializable)

Interface Hierarchy

• interface org.gersteinlab.tyna.core.operators.BinaryOperator
• interface org.gersteinlab.tyna.core.graph.EdgeIterator
• interface org.gersteinlab.tyna.core.io.GraphReader
• interface org.gersteinlab.tyna.core.io.GraphWriter
• interface org.gersteinlab.tyna.core.graph.NodeIterator
• interface java.rmi.Remote
  • interface org.gersteinlab.tyna.webservice.TYNA
• interface java.io.Serializable
  • interface org.gersteinlab.tyna.core.graph.AdvancedDirectedGraph
  • interface org.gersteinlab.tyna.core.graph.AdvancedGraph
  • interface org.gersteinlab.tyna.core.graph.AdvancedUndirectedGraph
  • interface org.gersteinlab.tyna.core.graph.DirectedGraph
    • interface org.gersteinlab.tyna.core.graph.AdvancedDirectedGraph
  • interface org.gersteinlab.tyna.core.graph.Graph
    • interface org.gersteinlab.tyna.core.graph.AdvancedDirectedGraph
    • interface org.gersteinlab.tyna.core.graph.AdvancedGraph
    • interface org.gersteinlab.tyna.core.graph.AdvancedUndirectedGraph
    • interface org.gersteinlab.tyna.core.graph.DirectedGraph
      • interface org.gersteinlab.tyna.core.graph.AdvancedDirectedGraph
    • interface org.gersteinlab.tyna.core.graph.MultiGraph
    • interface org.gersteinlab.tyna.core.graph.SimpleGraph
    • interface org.gersteinlab.tyna.core.graph.UndirectedGraph
      • interface org.gersteinlab.tyna.core.graph.AdvancedUndirectedGraph
  • interface org.gersteinlab.tyna.core.graph.MultiGraph
  • interface org.gersteinlab.tyna.core.graph.SimpleGraph
  • interface org.gersteinlab.tyna.core.graph.UndirectedGraph
    • interface org.gersteinlab.tyna.core.graph.AdvancedUndirectedGraph
• interface org.gersteinlab.tyna.core.operators.UnaryOperator