Package org.gersteinlab.tyna.core.graph

Contains basic definitions of graphs, nodes and edges.

See:
Description

Interface Summary

AdvancedDirectedGraph	This interface declares advanced methods for directed graphs such as motif mining that are not mandatory for basic implementations of DirectedGraph classes.
AdvancedGraph	This interface declares advanced methods such as graph statistics that are not mandatory for basic implementations of Graph classes.
AdvancedUndirectedGraph	This interface declares advanced methods for undirected graphs such as motif mining that are not mandatory for basic implementations of UndirectedGraph classes.
DirectedGraph	This interface declares that each implemented class is a directed graph.
EdgeIterator	This interface declares that each implemented class is an iterator of a set of edges of a graph.
Graph	This interface declares that each implemented class is a graph.
MultiGraph	This interface declares that each implemented class is a graph that may contain multiple edges between a pair of nodes, and may contain self loops.
NodeIterator	This interface declares that each implemented class is an iterator of a set of nodes of a graph.
SimpleGraph	This interface declares that each implemented class is a graph that does not contain duplicate edges, and does not contain self loops.
UndirectedGraph	This interface declares that each implemented class is an undirected graph.

Class Summary

AbstractGraph	This class is the abstract parent class of all actual graph classes.
AbstractMultiGraph	This class is the abstract parent class of all multigraph classes.
AbstractSimpleGraph	This class is the abstract parent class of all simple graph classes.
DirectedMultiGraph	This class represents a directed multigraph.
DirectedSimpleGraph	This class represents a directed simple graph.
Edge	This class represents an edge in a graph.
Node	This class represents a node in a graph.
UndirectedMultiGraph	This class represents an undirected multigraph.
UndirectedSimpleGraph	This class represents an undirected simple graph.

Exception Summary

GraphTypeException

This class represents an exception due to incorrect graph type.

Package org.gersteinlab.tyna.core.graph Description

Contains basic definitions of graphs, nodes and edges.