| Union of DRM bins from all cell lines |
Gzipped BED file |
| Union of DRM bins merged into regions, allowing gaps of 1 bin in size |
Gzipped BED file |
DRM-transcript pairs and associated TFs
Each line contains a DRM-transcript pair with related fields in different columns:
RNA setting (0-3)
Experimental method (0, 1, 2: RNA-seq; 3: CAGE)
Transcript selection (0: Poly A-; 1, 3: Poly A+; 2: Short RNA)
Cell compartment (always whole cell)
Parent gene of the transcript
Chromosome of the transcript
Coordinate of the TSS of the transcript, where first position of each chromosome is conted as 1 (as opposed to 0 in BED files)
Strand of the transcript
The histone modification involved in the correlation
Chromosome of the DRM
First position of the DRM
Last position of the DRM
Correlation between the histone modification signals at the DRM and the expression level of the transcript
P-value of correlation before correcting for multiple hypothesis testing
P-value of correlation after correctig for multiple hypothesis testing
List of cell lines with strong histone modification signals at the DRMs, and TRFs that bind the DRM in these cell lines in ENCODE naming format
List of cell lines with strong histone modification signals at the DRMs, and TRFs that bind the DRM in these cell lines in HGNC naming format
List of cell lines with strong histone modification signals at the DRMs, and the starting or ending location of a CTCF binding peak between the DRM and the transcript, if any, in the cell lines
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Gzipped tab-delimited file |